Wednesday, November 09, 2011

Installation of YSI Instrument & Download of Levelogger Data

On 30th October, a YSI 6600 Instrument was installed on the side of the ICON Pylon with large SS hose clamps. Unfortunately after a while we noticed that the instrument was leaking very slowly through a screw hole. The instrument was uninstalled and taken to the surface.

Leveloggers were removed and replaced on the station and the data from all four Leveloggers was successfully downloaded and sent for analysis at the University of Miami.

Cleaning of instruments was postponed and will take place when the seas are next calm enough. The station looked to be in good order with low biofouling.

Friday, September 09, 2011

Full Validation and Clean

On August 31st we completed a full validation and clean in preparation before our boats are out the water for 5 weeks. The station had low biofouling and instruments, chains, spectra lines etc were easy to clean. We set the Ground truth sensor just before 8am and started cleaning for a hour and 10 mins at 10:30. The Sensor was then removed from the system at 1:30pm. We are in prime Hurricane season now so hopefully everything will be ok.

Friday, August 05, 2011

Full Clean and Validation

Today, 5 August 2011 we completed a full clean and validation of the ICON station. 3 divers cleaned and scrubbed the spectra lines, chains, pins and shackles. The instruments were also cleaned and looked in good order. There was low bio-fouling on the station compared to other months. The Ground Truth Sensor was installed at 7:50, cleaning started at 9:35 and finished around 11:30. The GT sensor was then removed at around 1:45. Orientation has not changed.

Tuesday, July 12, 2011

Full Clean and Validation

Thursday 7th July, 4 divers and 2 snorkelers completed a thorough clean of the ICON Station. The station had moderate bio-fouling, but an increased amount of fire coral growth in multiple areas of the station. The spectra lines, chain, pins and shackles were scrubbed while the instruments and ICON pole were cleaned. The Ground Truth Sensor was installed at 8:55, cleaning started at 10:30 until 11:45, the GT sensor was then removed around 2:30. The orientation of the station is still the same as before.

Friday, June 10, 2011

Full validation and Clean

Yesterday, Thursday 9th June, the ICON station received a full cleaning and validation. The Ground Truth Sensor was installed at 7:45am. Cleaning began at 9:35 by two divers. The instruments, pylon, chain/spectra lines, and attachment points were cleaned. All cables and instruments looked to be in good working order. The amount of bio-fouling was low to moderate and the cleaning lasted about 1 hour and 20 mins. At 2:30 the GT sensor was removed. There has been no change in the orientation of the station, but 2 anodes on the chains disintegrated so need replacing.

Wednesday, April 27, 2011

Full validation and Clean

Monday 25th April, the ICON station received a full cleaning and validation. The Ground Truth Sensor was installed at 8:50am. Cleaning began at 10:35 by two divers. The instruments, pylon, chain/spectra lines, and attachment points were cleaned. All cables and instruments looked to be in good working order. The amount of bio-fouling was moderate and the cleaning lasted about 1 hour. At 2:30 the GT sensor was removed. The weather has been calm so their has been no change in the orientation of the station, but anodes on the chains and the station will need replacing soon.

Thursday, March 24, 2011

Full cleaning, validation and a swap out.

Today, 24 March 2011, a full cleaning and validation was completed. Rough weather has not allowed us to to get out to the station for a week. The validation CT was plugged in at 9am. Cleaning was initiated by 2 divers at 10:25 and lasted for one hour. All spectra lines, chains, and cables were inspected and confirmed to be in good working order. Copper screens were cleaned, but in good condition. There was light to moderate fouling of the pylon from algae build-up. The CT was then removed at 2:00. The pylon itself seams to be in good shape but standing with a slight tilt and twist to the north, no change though.

On Wednesday 2 March 2011, after having problems with transmitting data from the CTD to the CREWS computer at LCRC, we decided to swap out the CT cable with the CTD cable to test both the cables and instruments. The system came online before we switched these cables but were unaware.

We swapped out the CTD cable with the CT cable in the brain and then the again the instrument end. After turning the system everything again came back online, no damage had seamed to be done completing this swap out. The cables are still switched on the station. All chains and instruments were then cleaned, inspected and left to do their job.



Tuesday, February 15, 2011

Basic Cleaning

On the 10th February the Little Cayman ICON station received its first cleaning of the year starting with the chains, lines and post. The condition was surprisingly good with a low amount biological growth for the amount of time without cleaning. The underwater equipment received a check over and wipe down but did not need scrubbing since everything was replaced a couple of weeks ago. Everything seams to be in good working order.

Monday, February 14, 2011

station communications update

This is a follow-up message to my last blog post in January, which described a weeklong maintenance operation on the Little Cayman CREWS station. During that week, we attempted to repair the station's radio link (which was entirely offline) and satellite transmitter (which was performing poorly). By the end of the week we had repaired the radio link but left the satellite communications entirely offline. At that point the near-real time data feeds were suspended. There have been several developments since January.

First, some background on CREWS communications. All CREWS stations are installed with both a TX312 satellite transmitter and an RF401 radio transceiver. Each station has an assigned GOES communications window of 20 seconds once per hour at 1200 baud, during which it transmits summary data for the hour. Some transmissions may experience interference due to weather/clouds or other sources; for a typical CREWS station, up to 5% of transmissions may be lost. These data are stored to a local flash memory card and are recoverable during the next (usually annual) visit, but they are not easily recoverable in the short term.

At most CREWS stations, the radio transceiver provides access to station programming and data only during our annual maintenance trips. This is a two-way 38400 baud connection that is typically used to check station operations from a laptop computer on the boat immediately after station power-up.

However, the Little Cayman Research Centre (LCRC) can make much more extensive use of its radio link by virtue of its near proximity to the offshore station, its dedicated computer resources, and its full-time research staff. During this January visit the centre's computer was reinstalled and reconfigured to automatically poll the CREWS station for new data once every five minutes. The land-based computer therefore holds a full repository of all the station's data -- not just hourly summaries, but details of every measurement recorded by the station, whether 6-minute (CTDs, CT), 1-minute (Vaisala weather transmitter), 30-second (BIC light sensors) or 5-second (anemometer, barometer, air temperature). It must be emphasized that this data link is self-correcting -- even if the land-based computer were to go down for an hour, a month, a year, it would automatically catch up on all missing data whenever it came back online.

The situation in January was that the new satellite transmitter failed during deployment, and weather conditions had worsened to the point where it was not immediately possible to switch back to the (poorly-performing) transmitter. Therefore, we went one step further with the radio connection and implemented some scheduled tasks on the research centre's computer to send the hourly data via FTP to a NOAA server. These data are in different format than the satellite transmission and required new programming to parse and interpret, but as of Friday, February 11th the Little Cayman CREWS station is once again online in much the same way as it had been via satellite communications.

The station's most recent twelve hours of data (updated hourly) can be found at http://www.coral.noaa.gov/static/data_lciy2_Web_12.html.

A longer 3-day report (updated once daily) can be found at http://www.coral.noaa.gov/static/data_lciy2_Web_72.html.

The station's feed to NDBC is once again online and can be monitored at http://www.ndbc.noaa.gov/station_page.php?station=lciy2.

The station's "ecoforecast" project page, which is again loading the near-real time data, can be found at http://ecoforecast.coral.noaa.gov/index/0/LCIY2/station-home.

The state of station communications is therefore as follows: there is a near-real time means of access to station data. This communication link depends on the continued performance of the RF401 radios (both in the pylon and on land), the continued good health of LCRC's land-based computer, the power supply to LCRC, and LCRC's network connectivity. Any one of these elements might be subject to interruption, some to frequent interruption. However, it is now the case that if any of these elements experience temporary downtime, then all missing data will become available once the connection resumes. This is in stark contrast to the GOES communications link for most CREWS stations, where dropped transmissions may wait up to a year to be recovered.

Regarding the failure of the new TX312 satellite transmitter, we started a dialogue with the support people at Campbell Scientific, wherein we described the unit's failure and shared its error codes. We have been told that there may be a failure with the transmitter's OCXO crystal oscillator. This diagnosis could only be confirmed by retrieving the transmitter and downloading its logs through a direct connection to its diagnostics serial port. If confirmed, CSI would provide us with an RMA number for returning/repairing the transmitter.

The bottom line is that it would be preferable to have both means of communication, satellite and radio, operational. However, the station survived for a year with satellite but no radio, and it could easily survive for another year with radio but no satellite.

Mike J+

Friday, January 28, 2011

a week of instrument exchanges and collaboration

As always, you may click on any of the photos in this post to see larger versions.

The week of January 24th to 28th, 2011 brought together a number of people at the Little Cayman Research Centre (LCRC) for an unprecedented level of cooperation and collaboration on the maintenance of the Coral Reef Early Warning System (CREWS) station. The station was installed in July of 2009 as part of a joint effort by the Central Caribbean Marine Institute (CCMI), which is LCRC's parent institution, and the National Oceanic and Atmospheric Administration (NOAA) lab in Miami, the Atlantic Oceanographic and Meteorological Laboratory (AOML). CREWS is a project under the big umbrella of the Integrated Coral Observing Network (ICON).

From LCRC we had Robert Hedges, the research centre's new manager, Michael Rosen, a scientific diver who is also affliated with the Shoals Marine Laboratory, and Lowell Forbes, LCRC's longtime dive master and facilities engineer. Representing AOML was Mike Jankulak, CREWS field engineer and programmer and an employee of the University of Miami (UM). Also following the action remotely were researchers from UM's Rosenstiel School of Marine and Atmospheric Science (RSMAS), Dr. Peter Minnett, Miguel Izaguirre and Xiaofang Zhu.

Our goals, which were ambitious, were fourfold: to bring Rob H and Mike J together to go over the operation and maintenance needs of the CREWS station; to conduct the station's annual instrument replacement; to install some new sensors for Xiaofang Zhu's graduate research project; and to address some of the problems that had developed over the last year and a half. These problems included a suboptimally-installed air temperature sensor (in a spot which did not have free air flow), the failure of the research centre's land-based computer (which had been set up last year with a radio link to the offshore station), and the deterioration of the station's satellite transmitter.

The sea conditions were borderline; on Tuesday we were not able to tie up to the station at all, and our plans had to be rearranged on the fly. Wednesday was the calmest day and Thursday conditions had worsened but we were able to adjust operations to compensate (by mooring the boat to one of the support pins and only tying up to the pylon itself when absolutely necessary).

The station's regular maintenance schedule had been on hiatus since September of 2010, due to the departure of the previous LCRC manager and the resulting shortage of divers for this work. Also, no NOAA/AOML divers had visited the station since the pylon repair and straightening operations on April 8th, 2010 and July 6th, 2010. So we began with a survey of the station.

The underwater lines and chains were remarkably clean, considering their long period without maintenance. The spectra lines were somewhat "slimy" (see photo at left) but there was no significant growth (of barnacles or the like) on the spectra, chains, lashings or the pylon itself. Only the pins seemed to be in need of more aggressive cleaning (photo at right). It seems like this station is far less prone to bio-fouling compared to St. Croix or Puerto Rico.

The underwater instruments were fouled and in need of some cleaning -- notably, the copper screens were dissolving on the CTD and the sensing surface of the light sensor was clouded over (see photo). However, both instruments were removed on this trip and replaced with clean instruments. As reported in July, the station is noticeably twisted and this is most obvious when looking at the bottom lashings to the base plate. Whereas previously these lashings were found to be overtight (which may have contributed to the damage reported here in January of 2010), on this trip these lashings were extremely loose.

Two structural concerns were observed above the surface as well. First of all, the interior of the control unit or "brain" chamber was found to be noticeably damp. There was condensation on the inside surface of the station lid and enough moisture to drip off the brain's fiberglass board when it was first removed. All four conduits into the brain were found to be sealed tightly by aquaseal so it is not clear where this moisture is coming from, but it bears further monitoring. A second problem was that the bolts pinning the mast of the Biospherical "BIC" surface light sensor had both worked themselves loose enough that this mast could swing freely from side to side in its mount. The bolts were still in place, threaded into the fiberglass, and were securely tightened at the end of our operations.

We'll begin with the new LCRC/RSMAS/NOAA collaboration. Xiaofang Zhu is doing a detailed study of sea temperatures near the ocean's surface at two CREWS stations, one in Puerto Rico and this one in Little Cayman. Her team had provided four self-logging Levelogger sensors which automatically record sea temperature and pressure every six minutes.
These were installed on the pylon (on Tuesday) at depths of approximately 0.2m, 0.5m, 0.85m and 6.1m. These measurements were taken during low tide and the average instrument depths will be somewhat deeper than this. The installation was done by Mike Rosen and Mike Jankulak. On Thursday the location of the lowest sensor was fine-tuned by Mike Rosen and Lowell Forbes. Photographs and video were taken by Mike Rosen.

Next we'll talk about the instrument exchange. The replacement of the two underwater instruments was completed on Wednesday by Mike R and Lowell, and a third "groundtruth" sensor was connected and verified to be operational on Thursday. The aerial instruments and "brain" control package were removed from the station on Wednesday, replaced and reprogrammed on land, and reinstalled on Thursday.

This leads naturally into discussion of the advances made in our LCRC/NOAA collaboration. For the first time ever at a CREWS station, the "brain" installation and instrument connections were not done by NOAA/UM people but were instead conducted entirely by LCRC's new station manager, Rob Hedges (shown in photo at left). The importance of this development cannot be overstated. Previously LCRC was limited in the type of maintenance or intervention they could do, because nobody at LCRC was trained in the climbing of the pylon or even the simple act of powering the station up and down. These actions are more are now within the capabilities of the locally-based LCRC team. Whereas previously LCRC could not schedule major operations without coordinating with visiting AOML researchers (typically a once-per-year event), now they have assumed more complete control of their CREWS station.

Lastly we'll examine what was done to address the problems with the station's functions. The air temperature sensor was removed from its enclosed spot, and a new sensor was installed in the open air under a specially-made radiation shield. The radio link had originally been set up in January of 2010 but the station's computer crashed a few months later. Some efforts had been made (in May and July of 2010) to remotely guide LCRC researchers through the steps of reinstalling the software on a new computer but these were ultimately unsuccessful. In this current visit, we were able to reinstall and upgrade the software used by the radio link to make it operational. The research centre's computer is now configured to automatically pull updated data every five minutes from the offshore station.

The problem of the satellite transmissions proved more difficult to solve. Normally a CREWS station might lose up to 5% of its hourly satellite transmissions to bad weather or other signal loss. The Little Cayman station lost 25% of its transmissions in the last three months of 2010. The station inventory did not include a spare satellite transmission antenna so we retrieved the station antenna and cleaned its connector and cable plugs, and then carefully reinstalled its co-axial cable to avoid any sharp bends. We also replaced the transmitter itself with the backup transmitter stored in LCRC inventory on land. Unfortunately, the replacement transmitter (installed on Thursday) does not transmit at all. Due to the lack of a spare satellite antenna it was not possible to test the transmitter on land ahead of time, and by Thursday afternoon the sea conditions had deteriorated to the point where further access to the pylon would have to wait at least three more days (and perhaps longer).

Fortunately the repair of the radio link provides us with another way of accessing the station's data in near-real time. The LCRC computer used for the CREWS project, as mentioned, updates its local copy of the station data every five minutes. This includes much more detail than was available by satellite transmission. By satellite, we only saw the 60-minute summary data, but the radio link allows access to every instrument's individual data readings, whether 6-minute (CTDs, CT, transmitter diagnostics), 1-minute (our integrated Vaisala "WXT" weather transmitter), 30-second (our Biospherical "BIC" light sensors, datalogger diagnostics) or 5-second (the standalone air temperature sensor, barometer, anemometer and electronic compass)!

We quickly put together some scripts to upload the hourly data to a NOAA ftp site, so that they could be processed at AOML as before. Some further scripting will be required on the NOAA side next week before these data feeds resume. These feeds include the one to ICON's G2/Ecoforecasting project and the one to NOAA's National Data Buoy Center (NDBC), which is the means by which the Little Cayman data are assimilated into the global weather models used by hurricane forecasters. Furthermore, a monthly job was created to copy some of the larger (6-minute, 1-minute) data files without unduly burdening the LCRC network connection. All of these data will remain recorded on the station's new 1GB flash memory card (an upgrade from 64MB used until last week) which can continue to log data without loss until late in 2013.

One final note about data archiving: after retrieval of the station's CTD which had been deployed for 18 months, we connected directly to the unit and downloaded the locally-stored data from its flash memory. This dataset has been confirmed to be intact and is available for the asking.

It's been a hugely productive week all around. LCRC's advances in assuming control of their CREWS station maintenance and configuration, the new collaboration between LCRC and RSMAS researchers, and the greater access to station data by means of the repaired radio link are each in themselves significant milestones. Congratulations to everyone involved in this very successful operation!

(signed)
Mike Jankulak

Levelogger photos and video taken by Mike Rosen; all other photos taken by Mike Jankulak.